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Conversion of Freiburg (Fusion) Biobricks to the Silver (BioFusion) format
(2009-03-30)
This Request for Comments (RFC) describes a strategy for converting Biobricks
from the Freiburg (aka Fusion) format to the Silver lab (aka BioFusion)
format.
Instructions to BBF RFC Authors
(OpenWetWare, 2008-11-10)
This BioBricks Foundation Request for Comments (BBF RFC) provides in-
formation about the preparation and submission of BBF RFCs to The Bio-
Bricks Foundation (BBF).
Standard for Synthesis of Customized Peptides by Non-Ribosomal Peptide Synthetases
(2013-10-04)
The purpose of this RFC is to introduce a standardized framework for the engineering of customizable non-ribosomal peptide synthetases (NRPS) and their application for in vivo and in vitro synthesis of short non-ribosomal ...
Open Sequence Initiative: a part submission standard to complement modern DNA assembly techniques
(2013-10-06)
The discipline of synthetic biology emphasizes the application of engineering principles such as standardization, abstraction, modularity, and rational design to complex biological systems. The archetypical example of such ...
MONOD, a Collaborative Tool for Manipulating Biological Knowledge
(2008-06-19)
We describe an open source software tool called MONOD, for Modeler’s Notebook and Datastore, designed to capture and
communicate knowledge generated during the process of building models of many-component biological ...
The Measurement of rho‐independent Transcription Terminator Efficiency
(2012-10-11)
The purpose of this RFC is to provide standard methodology for the measurement of the absolute strength of terminators in bacteria. Because we have characterized the performance of terminator in E. coli and used a simple ...
Engineered Post-Translational Logic (PTL)
(2005-12-07)
Current synthetic biological circuits make use of protein-DNA and RNA-RNA interactions to control gene expression in bacteria. Systems that rely on the regulation of gene expression are relatively slow and unsuitable for ...
BioJADE: A Design and Simulation Tool for Synthetic Biological Systems
(2004-05-28)
The next generations of both biological engineering and computer engineering demand that control be exerted at the molecular level. Creating, characterizing and controlling synthetic biological systems may provide us ...
May 2006 correspondance between James Randerson and Drew Endy
(2006-06-15)
I am a science journalist with the Guardian newspaper in London. We are a national daily paper. I am hoping to put together an investigative piece on how easy (or not) it would be for a would-be terrorist to put together ...
Refactoring Bacteriophage T7 (2004 version)
(2004-10)
Natural biological systems are selected by evolution to continue to exist. Evolution might
give rise to complicated systems that are difficult to discover, measure, model, and direct.
Here, we redesign the genome of a ...