[gevorg@bmc-134] /home/gevorg/TA/7.91/ps2$ cat seq_test.txt
> some sequence
GATCATGATTAAGGCATCCGACACACCTGGTACCCGTGCCTAGTAGATTGAGAAGGATGGCGGGGGCTAGAGCAGCATCA
CACGCTCCGCAGGTGCACACTCAACTGAAAGTAATAAGCCTAGAAAGCAATTGTGTGATAAGGGCGCCATAAGCTCGGCG
CTGCGCATAGGCGGAATCATATCTGCCCCCTGGTAGCCAGTAACGTCATTAGCATTTTGAAGGTAGTTCACCCGGCAAGA
GTCTTTAGGTCGCAGTTCTAGGCAGCTCCCTACGCAGGTCCGCTACCTTACCCACGCACAGATACCTTAAATGTCAGGTG
GCAAAAGTCTCCCAGGACCGAGCTGTCAATGCACGTCAAGACTTTTAATTACTGCAGGTCCGATCCTATTTGGCTCACTG
TGGCGCAATAAGCGCATACCGCACGAGAGCGTAAACTCGTGGAGCCGGTCTTAGAATAGGAAAACCTTACTACTTGACTC
GCGCGAAGAACCTCGAGGGTATGTACGAGTATCCGTATATGCAAGCCTCCAATAGGAGGGGCCTATGCACAGCAGGCGTA
CTATATGCATTCAAAGATTATAAGCGGATACCAAGTTCCTACGCTCGATGCAGTCCTCAGTCTATGCGGTATGCCTTTGA
TTCGACAGCGTAACCCATTGCCTTTTCCCTTACTAATACTGATTAGGTCCAGAAGCCATTTAGCTTTCGCAGGAAGCCTC
TAGGACATGCTCCCTAGGGCACGAGTGCCGGGAATGATCCAGCACTACGCAATATTAAAACGCCACTACTCTGCAGGCTC
TCTTGCCGTTAGTTATAAAACAGTCGAGGTATATATGCCGGATTTCTATGCGGGGTTAGAATGCTGGAGGCCAGTAAAAG
CGGAATATACGAGTATAGGGGGGGTACGTCTGTTACTCAGGAAATTCATAGGCGCAGATGCAGACTAAGGTCAGACTGAA
GGTCCGCCCGAACTTGGTTGTTTCTGAGCGACCATACTCGAGGCCTGAATGTAGGCATGATGAGAATACGTAAAAAATGA
ACTCCGGCTGTGGGCTCGTGCAGGCTGATTGGCGCCGTTAGATCAATGTTTTTCAGCCTGCCATTGAGACGACACGAGTC
CCCTCCTGCAATTAGCTGGGTGTGAACAGACCGCAGCATACAAAAAGAGCGCTGTTACTCGTGCTGCGCGAAACCGGCGG
AGAGTAGTCCAATTACGGGAGAAAGGATGTATGCACCGGGAGATTTTAAGAACTGTCGCTGGGAAGAGGAACTTCTCCTC
TCCCATAGTTAGTATTAACGCGATTATGGGAAAAACATCCA
[gevorg@bmc-134] /home/gevorg/TA/7.91/ps2$
[gevorg@bmc-134] /home/gevorg/TA/7.91/ps2$ cat motif_test.txt
KSWMNRT
YRWHBAC
[gevorg@bmc-134] /home/gevorg/TA/7.91/ps2$
[gevorg@bmc-134] /home/gevorg/TA/7.91/ps2$ python splicing.py motif_test.txt seq_test.txt
found 5' at 105
found 3' at 365
found 5' at 394
found 3' at 1209
Concatination of exons:
GATCATGATTAAGGCATCCGACACACCTGGTACCCGTGCCTAGTAGATTGAGAAGGATGGCGGGGGCTAGAGCAGCATCACACGCTCCGCAGGTGCACACTCAACTGCAGGTCCGATCCTATTTGGCGGGAGAAAGGATGTATGCACCGGGAGATTTTAAGAACTGTCGCTGGGAAGAGGAACTTCTCCTCTCCCATAGTTAGTATTAACGCGATTATGGGAAAAACATCCA
[gevorg@bmc-134] /home/gevorg/TA/7.91/ps2$